IL_5JUO_255

3D structure

PDB id

5JUO (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure I (fully rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UACCAUAG*CAAAAA

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUO|1|EC|U|6854
5JUO|1|EC|A|6855
5JUO|1|EC|C|6856
5JUO|1|EC|C|6857
5JUO|1|EC|A|6858
5JUO|1|EC|U|6859
5JUO|1|EC|A|6860
5JUO|1|EC|G|6861
*
5JUO|1|EC|C|6869
5JUO|1|EC|A|6870
5JUO|1|EC|A|6871
5JUO|1|EC|A|6872
5JUO|1|EC|A|6873
5JUO|1|EC|A|6874

Current chains

Chain EC

IRES

Nearby chains

Chain CB

uS7 (yeast S5)

Chain WB

eS25 (yeast S25)