IL_5JUP_031

3D structure

PDB id

5JUP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUC*GC

Length

5 nucleotides

Bulged bases

5JUP|1|A|U|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUP_031 not in the Motif Atlas

Geometric match to IL_3D2V_001

Geometric discrepancy: 0.2878

The information below is about IL_3D2V_001

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_97561.3

Basepair signature

cWW-L-cWW

Number of instances in this motif group

147

Unit IDs

5JUP|1|A|G|557
5JUP|1|A|U|558
5JUP|1|A|C|559
*
5JUP|1|A|G|586
5JUP|1|A|C|587

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AB

uS3 (yeast S3)

Chain BC

eS30 (yeast S30)

Chain EC

IRES