IL_5JUP_099
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAAC*GAGUGAAAAAGUAC
- Length
- 18 nucleotides
- Bulged bases
- 5JUP|1|B|A|398, 5JUP|1|B|A|402
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUP_099 not in the Motif Atlas
- Geometric match to IL_5TBW_014
- Geometric discrepancy: 0.1123
- The information below is about IL_5TBW_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_60992.7
- Basepair signature
- cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L
- Number of instances in this motif group
- 6
Unit IDs
5JUP|1|B|G|376
5JUP|1|B|A|377
5JUP|1|B|A|378
5JUP|1|B|C|379
*
5JUP|1|B|G|390
5JUP|1|B|A|391
5JUP|1|B|G|392
5JUP|1|B|U|393
5JUP|1|B|G|394
5JUP|1|B|A|395
5JUP|1|B|A|396
5JUP|1|B|A|397
5JUP|1|B|A|398
5JUP|1|B|A|399
5JUP|1|B|G|400
5JUP|1|B|U|401
5JUP|1|B|A|402
5JUP|1|B|C|403
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain DA
- uL24 (yeast L26)
- Chain QA
- eL39 (yeast L39)
- Chain U
- uL22 (yeast L17)
Coloring options: