IL_5JUP_257
3D structure
- PDB id
- 5JUP (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure II (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CAUA*UAAGCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUP_257 not in the Motif Atlas
- Homologous match to IL_8P9A_338
- Geometric discrepancy: 0.0996
- The information below is about IL_8P9A_338
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07469.3
- Basepair signature
- cWW-tSH-cWW-cSH-R-cWW
- Number of instances in this motif group
- 3
Unit IDs
5JUP|1|B|C|2889
5JUP|1|B|A|2890
5JUP|1|B|U|2891
5JUP|1|B|A|2892
*
5JUP|1|B|U|2909
5JUP|1|B|A|2910
5JUP|1|B|A|2911
5JUP|1|B|G|2912
5JUP|1|B|C|2913
5JUP|1|B|G|2914
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain AA
- uL14 (yeast L23)
- Chain G
- uL3 (yeast L3)
- Chain M
- uL6 (yeast L9)
- Chain RA
- eL40 (yeast L40)
- Chain T
- uL13 (yeast L16)
Coloring options: