IL_5JUS_013

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUA*UUUUC

Length

8 nucleotides

Bulged bases

5JUS|1|A|U|260

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_013 not in the Motif Atlas

Geometric match to IL_7RQB_022

Geometric discrepancy: 0.161

The information below is about IL_7RQB_022

Detailed Annotation

Major groove platform with extra cWW

Broad Annotation

Major groove platform

Motif group

IL_05564.2

Basepair signature

cWW-cSH-cWW-cWW

Number of instances in this motif group

14

Unit IDs

5JUS|1|A|G|204
5JUS|1|A|U|205
5JUS|1|A|A|206
*
5JUS|1|A|U|259
5JUS|1|A|U|260
5JUS|1|A|U|261
5JUS|1|A|U|262
5JUS|1|A|C|263

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain BB

eS4 (yeast S4)

Chain DB

eS6 (yeast S6)

Chain FB

eS8 (yeast S8)