IL_5JUS_058

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5JUS|1|A|U|1269

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_058 not in the Motif Atlas

Homologous match to IL_4V88_449

Geometric discrepancy: 0.2613

The information below is about IL_4V88_449

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5JUS|1|A|G|1268
5JUS|1|A|U|1269
5JUS|1|A|G|1270
*
5JUS|1|A|C|1440
5JUS|1|A|C|1441

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AC

uS14 (yeast S29)

Chain CC

eS31 (yeast S31)

Chain DC

yeast eEF2

Chain HB

eS10 (yeast S10)