IL_5JUS_069
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GUCUAAC*GUAAUC
- Length
- 13 nucleotides
- Bulged bases
- 5JUS|1|A|A|1516, 5JUS|1|A|U|1517
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_069 not in the Motif Atlas
- Homologous match to IL_4V88_460
- Geometric discrepancy: 0.2785
- The information below is about IL_4V88_460
- Detailed Annotation
- 180 degree turn
- Broad Annotation
- No text annotation
- Motif group
- IL_77092.1
- Basepair signature
- cWW-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 2
Unit IDs
5JUS|1|A|G|1488
5JUS|1|A|U|1489
5JUS|1|A|C|1490
5JUS|1|A|U|1491
5JUS|1|A|A|1492
5JUS|1|A|A|1493
5JUS|1|A|C|1494
*
5JUS|1|A|G|1513
5JUS|1|A|U|1514
5JUS|1|A|A|1515
5JUS|1|A|A|1516
5JUS|1|A|U|1517
5JUS|1|A|C|1518
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain AB
- uS3 (yeast S3)
- Chain AC
- uS14 (yeast S29)
- Chain QB
- eS19 (yeast S19)
- Chain RB
- uS10 (yeast S20)
Coloring options: