IL_5JUS_071
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGGAUAG*CUUCAAC
- Length
- 14 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_071 not in the Motif Atlas
- Homologous match to IL_8C3A_469
- Geometric discrepancy: 0.2077
- The information below is about IL_8C3A_469
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_10092.1
- Basepair signature
- cWW-tSH-tSH-L-R-cWW-L-R-cWW
- Number of instances in this motif group
- 1
Unit IDs
5JUS|1|A|G|1540
5JUS|1|A|G|1541
5JUS|1|A|G|1542
5JUS|1|A|A|1543
5JUS|1|A|U|1544
5JUS|1|A|A|1545
5JUS|1|A|G|1546
*
5JUS|1|A|C|1565
5JUS|1|A|U|1566
5JUS|1|A|U|1567
5JUS|1|A|C|1568
5JUS|1|A|A|1569
5JUS|1|A|A|1570
5JUS|1|A|C|1571
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain PB
- uS13 (yeast S18)
- Chain QB
- eS19 (yeast S19)
Coloring options: