IL_5JUS_101
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGAUAAAUC*GGAAUAC
- Length
- 16 nucleotides
- Bulged bases
- 5JUS|1|B|A|519, 5JUS|1|B|U|520
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_101 not in the Motif Atlas
- Homologous match to IL_5TBW_019
- Geometric discrepancy: 0.334
- The information below is about IL_5TBW_019
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_74024.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUS|1|B|G|517
5JUS|1|B|G|518
5JUS|1|B|A|519
5JUS|1|B|U|520
5JUS|1|B|A|521
5JUS|1|B|A|522
5JUS|1|B|A|523
5JUS|1|B|U|524
5JUS|1|B|C|525
*
5JUS|1|B|G|567
5JUS|1|B|G|568
5JUS|1|B|A|569
5JUS|1|B|A|570
5JUS|1|B|U|571
5JUS|1|B|A|572
5JUS|1|B|C|573
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain H
- uL4 (yeast L4)
- Chain K
- uL30 (yeast L7)
- Chain R
- eL14 (yeast L14)
- Chain X
- eL20 (yeast L20)
Coloring options: