IL_5JUS_140
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- UGACGAAG*UCGAA
- Length
- 13 nucleotides
- Bulged bases
- 5JUS|1|B|C|1391
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_140 not in the Motif Atlas
- Homologous match to IL_5TBW_059
- Geometric discrepancy: 0.2742
- The information below is about IL_5TBW_059
- Detailed Annotation
- Kink-turn
- Broad Annotation
- No text annotation
- Motif group
- IL_70923.5
- Basepair signature
- cWW-cWW-tSS-tSH-tHS-cWW-tHS
- Number of instances in this motif group
- 32
Unit IDs
5JUS|1|B|U|1388
5JUS|1|B|G|1389
5JUS|1|B|A|1390
5JUS|1|B|C|1391
5JUS|1|B|G|1392
5JUS|1|B|A|1393
5JUS|1|B|A|1394
5JUS|1|B|G|1395
*
5JUS|1|B|U|1415
5JUS|1|B|C|1416
5JUS|1|B|G|1417
5JUS|1|B|A|1418
5JUS|1|B|A|1419
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain DA
- uL24 (yeast L26)
- Chain H
- uL4 (yeast L4)
- Chain J
- eL6 (yeast L6)
- Chain JA
- eL32 (yeast L32)
- Chain U
- uL22 (yeast L17)
Coloring options: