IL_5JUS_187

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UCAAG*CGACA

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_187 not in the Motif Atlas

Homologous match to IL_8C3A_114

Geometric discrepancy: 0.2703

The information below is about IL_8C3A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_65585.1

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

5JUS|1|B|U|2835
5JUS|1|B|C|2836
5JUS|1|B|A|2837
5JUS|1|B|A|2838
5JUS|1|B|G|2839
*
5JUS|1|B|C|2849
5JUS|1|B|G|2850
5JUS|1|B|A|2851
5JUS|1|B|C|2852
5JUS|1|B|A|2853

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain N

uL16 (yeast L10)

Chain RA

eL40 (yeast L40)