IL_5JUS_211

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUAC*GUC

Length

7 nucleotides

Bulged bases

5JUS|1|B|U|3319

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_211 not in the Motif Atlas

Geometric match to IL_6CZR_118

Geometric discrepancy: 0.274

The information below is about IL_6CZR_118

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_87907.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

183

Unit IDs

5JUS|1|B|G|3318
5JUS|1|B|U|3319
5JUS|1|B|A|3320
5JUS|1|B|C|3321
*
5JUS|1|B|G|3386
5JUS|1|B|U|3387
5JUS|1|B|C|3388

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain G

uL3 (yeast L3)

Chain IA

eL31 (yeast L31)