IL_5JUS_219
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GAAAGCA*UUAAGC
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_219 not in the Motif Atlas
- Homologous match to IL_5TBW_373
- Geometric discrepancy: 0.2155
- The information below is about IL_5TBW_373
- Detailed Annotation
- Minor groove platform related
- Broad Annotation
- No text annotation
- Motif group
- IL_10207.3
- Basepair signature
- cWW-cWW-L-cSW-L-R-L-cWW-R-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUS|1|D|G|21
5JUS|1|D|A|22
5JUS|1|D|A|23
5JUS|1|D|A|24
5JUS|1|D|G|25
5JUS|1|D|C|26
5JUS|1|D|A|27
*
5JUS|1|D|U|53
5JUS|1|D|U|54
5JUS|1|D|A|55
5JUS|1|D|A|56
5JUS|1|D|G|57
5JUS|1|D|C|58
Current chains
- Chain D
- 5S ribosomal RNA
Nearby chains
- Chain I
- uL18 (yeast L5)
- Chain O
- uL5 (yeast L11)
Coloring options: