IL_5JUS_229

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GGCCGGU*GAUUUCC

Length

14 nucleotides

Bulged bases

5JUS|1|A|U|680

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUS|1|A|G|651
5JUS|1|A|G|652
5JUS|1|A|C|653
5JUS|1|A|C|654
5JUS|1|A|G|655
5JUS|1|A|G|656
5JUS|1|A|U|657
*
5JUS|1|A|G|677
5JUS|1|A|A|678
5JUS|1|A|U|679
5JUS|1|A|U|680
5JUS|1|A|U|681
5JUS|1|A|C|682
5JUS|1|A|C|683

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain GB

uS4 (yeast S9)