IL_5JUS_231

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UAU*AGA

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUS_231 not in the Motif Atlas

Geometric match to IL_5TBW_068

Geometric discrepancy: 0.2641

The information below is about IL_5TBW_068

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5JUS|1|A|U|886
5JUS|1|A|A|887
5JUS|1|A|U|888
*
5JUS|1|A|A|924
5JUS|1|A|G|925
5JUS|1|A|A|926

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain F

uL2 (yeast L2)

Chain LB

uS11 (yeast S14)

Chain YA

eS1 (yeast S1)