IL_5JUS_253
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- CGGAAUU*GGAGAUG
- Length
- 14 nucleotides
- Bulged bases
- 5JUS|1|B|U|1716, 5JUS|1|B|A|1729
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_253 not in the Motif Atlas
- Homologous match to IL_8P9A_301
- Geometric discrepancy: 0.3724
- The information below is about IL_8P9A_301
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_93476.1
- Basepair signature
- cWW-tSH-L-R-tSS-tHS-L-R-cWW
- Number of instances in this motif group
- 6
Unit IDs
5JUS|1|B|C|1711
5JUS|1|B|G|1712
5JUS|1|B|G|1713
5JUS|1|B|A|1714
5JUS|1|B|A|1715
5JUS|1|B|U|1716
5JUS|1|B|U|1717
*
5JUS|1|B|G|1727
5JUS|1|B|G|1728
5JUS|1|B|A|1729
5JUS|1|B|G|1730
5JUS|1|B|A|1731
5JUS|1|B|U|1732
5JUS|1|B|G|1733
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain EA
- eL27 (yeast L27)
- Chain HA
- eL30 (yeast L30)
- Chain KB
- uS15 (yeast S13)
- Chain LA
- eL34 (yeast L34)
- Chain UA
- eL43 (yeast L43)
- Chain W
- eL19 (yeast L19)
Coloring options: