IL_5JUS_254
3D structure
- PDB id
- 5JUS (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4.2 Å
Loop
- Sequence
- GGAAGUCGG*CUGUC
- Length
- 14 nucleotides
- Bulged bases
- 5JUS|1|B|G|2335
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUS_254 not in the Motif Atlas
- Homologous match to IL_8C3A_484
- Geometric discrepancy: 0.2349
- The information below is about IL_8C3A_484
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_04332.2
- Basepair signature
- cWW-cWW-L-cWW-L-R-L-R-L-L
- Number of instances in this motif group
- 3
Unit IDs
5JUS|1|B|G|1898
5JUS|1|B|G|1899
5JUS|1|B|A|1900
5JUS|1|B|A|1901
5JUS|1|B|G|1902
5JUS|1|B|U|1903
5JUS|1|B|C|1904
5JUS|1|B|G|1905
5JUS|1|B|G|1906
*
5JUS|1|B|C|2333
5JUS|1|B|U|2334
5JUS|1|B|G|2335
5JUS|1|B|U|2336
5JUS|1|B|C|2337
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain AA
- uL14 (yeast L23)
- Chain G
- uL3 (yeast L3)
Coloring options: