IL_5JUS_264

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

GUAUUGGUUACCCAUC*GUAAGGCUUUC

Length

27 nucleotides

Bulged bases

5JUS|1|EC|G|6772, 5JUS|1|EC|G|6773, 5JUS|1|EC|U|6774, 5JUS|1|EC|U|6781

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUS|1|EC|G|6767
5JUS|1|EC|U|6768
5JUS|1|EC|A|6769
5JUS|1|EC|U|6770
5JUS|1|EC|U|6771
5JUS|1|EC|G|6772
5JUS|1|EC|G|6773
5JUS|1|EC|U|6774
5JUS|1|EC|U|6775
5JUS|1|EC|A|6776
5JUS|1|EC|C|6777
5JUS|1|EC|C|6778
5JUS|1|EC|C|6779
5JUS|1|EC|A|6780
5JUS|1|EC|U|6781
5JUS|1|EC|C|6782
*
5JUS|1|EC|G|6814
5JUS|1|EC|U|6815
5JUS|1|EC|A|6816
5JUS|1|EC|A|6817
5JUS|1|EC|G|6818
5JUS|1|EC|G|6819
5JUS|1|EC|C|6820
5JUS|1|EC|U|6821
5JUS|1|EC|U|6822
5JUS|1|EC|U|6823
5JUS|1|EC|C|6824

Current chains

Chain EC

IRES

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain E

uL1 (yeast L1)