IL_5JUS_265

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

UACCAUAG*CAAAAA

Length

14 nucleotides

Bulged bases

5JUS|1|EC|A|6872, 5JUS|1|EC|A|6873

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUS|1|EC|U|6854
5JUS|1|EC|A|6855
5JUS|1|EC|C|6856
5JUS|1|EC|C|6857
5JUS|1|EC|A|6858
5JUS|1|EC|U|6859
5JUS|1|EC|A|6860
5JUS|1|EC|G|6861
*
5JUS|1|EC|C|6869
5JUS|1|EC|A|6870
5JUS|1|EC|A|6871
5JUS|1|EC|A|6872
5JUS|1|EC|A|6873
5JUS|1|EC|A|6874

Current chains

Chain EC

IRES

Nearby chains

Chain CB

uS7 (yeast S5)

Chain WB

eS25 (yeast S25)