IL_5JUS_272

3D structure

PDB id

5JUS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure III (mid-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4.2 Å

Loop

Sequence

AUAGAGGGUGUAGAA*UACCACUACCUUUAUAGU

Length

33 nucleotides

Bulged bases

5JUS|1|B|U|2453, 5JUS|1|B|G|2454, 5JUS|1|B|A|2458, 5JUS|1|B|A|2488, 5JUS|1|B|C|2489, 5JUS|1|B|C|2492, 5JUS|1|B|U|2493, 5JUS|1|B|A|2494, 5JUS|1|B|C|2495, 5JUS|1|B|C|2496, 5JUS|1|B|U|2498

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUS|1|B|A|2445
5JUS|1|B|U|2446
5JUS|1|B|A|2447
5JUS|1|B|G|2448
5JUS|1|B|A|2449
5JUS|1|B|G|2450
5JUS|1|B|G|2451
5JUS|1|B|G|2452
5JUS|1|B|U|2453
5JUS|1|B|G|2454
5JUS|1|B|U|2455
5JUS|1|B|A|2456
5JUS|1|B|G|2457
5JUS|1|B|A|2458
5JUS|1|B|A|2459
*
5JUS|1|B|U|2487
5JUS|1|B|A|2488
5JUS|1|B|C|2489
5JUS|1|B|C|2490
5JUS|1|B|A|2491
5JUS|1|B|C|2492
5JUS|1|B|U|2493
5JUS|1|B|A|2494
5JUS|1|B|C|2495
5JUS|1|B|C|2496
5JUS|1|B|U|2497
5JUS|1|B|U|2498
5JUS|1|B|U|2499
5JUS|1|B|A|2500
5JUS|1|B|U|2501
5JUS|1|B|A|2502
5JUS|1|B|G|2503
5JUS|1|B|U|2504

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain E

uL1 (yeast L1)

Chain EC

IRES

Chain L

eL8 (yeast L8)

Chain NA

eL36 (yeast L36)

Chain S

eL15 (yeast L15)