IL_5JUT_046
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUGUCAG*CUUGGAUUUA
- Length
- 17 nucleotides
- Bulged bases
- 5JUT|1|A|G|913
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUT_046 not in the Motif Atlas
- Homologous match to IL_8C3A_440
- Geometric discrepancy: 0.3384
- The information below is about IL_8C3A_440
- Detailed Annotation
- Kink-turn related
- Broad Annotation
- No text annotation
- Motif group
- IL_22252.1
- Basepair signature
- cWW-L-R-L-R-L-R-L-R-L-R-L-cWW-L
- Number of instances in this motif group
- 1
Unit IDs
5JUT|1|A|U|893
5JUT|1|A|U|894
5JUT|1|A|G|895
5JUT|1|A|U|896
5JUT|1|A|C|897
5JUT|1|A|A|898
5JUT|1|A|G|899
*
5JUT|1|A|C|910
5JUT|1|A|U|911
5JUT|1|A|U|912
5JUT|1|A|G|913
5JUT|1|A|G|914
5JUT|1|A|A|915
5JUT|1|A|U|916
5JUT|1|A|U|917
5JUT|1|A|U|918
5JUT|1|A|A|919
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain LB
- uS11 (yeast S14)
- Chain YA
- eS1 (yeast S1)
Coloring options: