IL_5JUT_070

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUG*UUAUC

Length

8 nucleotides

Bulged bases

5JUT|1|A|U|1370, 5JUT|1|A|A|1371

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_070 not in the Motif Atlas

Homologous match to IL_4V88_457

Geometric discrepancy: 0.3037

The information below is about IL_4V88_457

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

5JUT|1|A|G|1352
5JUT|1|A|U|1353
5JUT|1|A|G|1354
*
5JUT|1|A|U|1369
5JUT|1|A|U|1370
5JUT|1|A|A|1371
5JUT|1|A|U|1372
5JUT|1|A|C|1373

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain NB

uS9 (yeast S16)

Chain QB

eS19 (yeast S19)

Chain RB

uS10 (yeast S20)