IL_5JUT_084
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGAG*CAAA
- Length
- 8 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUT_084 not in the Motif Atlas
- Geometric match to IL_1SAQ_002
- Geometric discrepancy: 0.1673
- The information below is about IL_1SAQ_002
- Detailed Annotation
- Double sheared
- Broad Annotation
- Double sheared
- Motif group
- IL_09705.13
- Basepair signature
- cWW-tSH-tHS-cWW
- Number of instances in this motif group
- 34
Unit IDs
5JUT|1|A|U|1669
5JUT|1|A|G|1670
5JUT|1|A|A|1671
5JUT|1|A|G|1672
*
5JUT|1|A|C|1729
5JUT|1|A|A|1730
5JUT|1|A|A|1731
5JUT|1|A|A|1732
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain BA
- eL24 (yeast L24)
- Chain DB
- eS6 (yeast S6)
- Chain FB
- eS8 (yeast S8)
Coloring options: