IL_5JUT_091
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUGAACUU*AUCAAUAAG
- Length
- 17 nucleotides
- Bulged bases
- 5JUT|1|B|A|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUT_091 not in the Motif Atlas
- Homologous match to IL_8C3A_005
- Geometric discrepancy: 0.1217
- The information below is about IL_8C3A_005
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_35728.2
- Basepair signature
- cWW-L-R-tSH-tHW-tHH-tHS-cWW-cWW
- Number of instances in this motif group
- 3
Unit IDs
5JUT|1|B|C|31
5JUT|1|B|U|32
5JUT|1|B|G|33
5JUT|1|B|A|34
5JUT|1|B|A|35
5JUT|1|B|C|36
5JUT|1|B|U|37
5JUT|1|B|U|38
*
5JUT|1|B|A|45
5JUT|1|B|U|46
5JUT|1|B|C|47
5JUT|1|B|A|48
5JUT|1|B|A|49
5JUT|1|B|U|50
5JUT|1|B|A|51
5JUT|1|B|A|52
5JUT|1|B|G|53
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain FA
- uL15 (yeast L28)
- Chain OA
- eL37 (yeast L37)
- Chain Q
- eL13 (yeast L13)
- Chain S
- eL15 (yeast L15)
- Chain TA
- eL42 (yeast L42)
Coloring options: