IL_5JUT_103

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUGUUUUG*UUUCAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUT|1|B|G|443
5JUT|1|B|U|444
5JUT|1|B|G|445
5JUT|1|B|U|446
5JUT|1|B|U|447
5JUT|1|B|U|448
5JUT|1|B|U|449
5JUT|1|B|G|450
*
5JUT|1|B|U|486
5JUT|1|B|U|487
5JUT|1|B|U|488
5JUT|1|B|C|489
5JUT|1|B|A|490
5JUT|1|B|C|491

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain J

eL6 (yeast L6)