IL_5JUT_128
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUCCG*UGA
- Length
- 8 nucleotides
- Bulged bases
- 5JUT|1|B|C|1016, 5JUT|1|B|C|1017
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUT_128 not in the Motif Atlas
- Homologous match to IL_8C3A_508
- Geometric discrepancy: 0.4498
- The information below is about IL_8C3A_508
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_07195.1
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 5
Unit IDs
5JUT|1|B|U|1014
5JUT|1|B|U|1015
5JUT|1|B|C|1016
5JUT|1|B|C|1017
5JUT|1|B|G|1018
*
5JUT|1|B|U|1034
5JUT|1|B|G|1035
5JUT|1|B|A|1036
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain EC
- IRES
- Chain I
- uL18 (yeast L5)
- Chain N
- uL16 (yeast L10)
- Chain O
- uL5 (yeast L11)
Coloring options: