IL_5JUT_137

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUG*CC

Length

5 nucleotides

Bulged bases

5JUT|1|B|U|1208

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_137 not in the Motif Atlas

Homologous match to IL_5TBW_053

Geometric discrepancy: 0.2297

The information below is about IL_5TBW_053

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_83039.19

Basepair signature

cWW-L-cWW

Number of instances in this motif group

123

Unit IDs

5JUT|1|B|G|1207
5JUT|1|B|U|1208
5JUT|1|B|G|1209
*
5JUT|1|B|C|1296
5JUT|1|B|C|1297

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain D

5S ribosomal RNA; 5S rRNA

Chain M

uL6 (yeast L9)

Chain RA

eL40 (yeast L40)

Chain X

eL20 (yeast L20)