IL_5JUT_190

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UA*UAAG

Length

6 nucleotides

Bulged bases

5JUT|1|B|A|2911

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_190 not in the Motif Atlas

Geometric match to IL_5TBW_111

Geometric discrepancy: 0.2817

The information below is about IL_5TBW_111

Detailed Annotation

Major groove platform with intercalation

Broad Annotation

Major groove platform

Motif group

IL_95601.6

Basepair signature

cWW-L-cWW

Number of instances in this motif group

9

Unit IDs

5JUT|1|B|U|2891
5JUT|1|B|A|2892
*
5JUT|1|B|U|2909
5JUT|1|B|A|2910
5JUT|1|B|A|2911
5JUT|1|B|G|2912

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain M

uL6 (yeast L9)

Chain RA

eL40 (yeast L40)

Chain T

uL13 (yeast L16)