IL_5JUT_234
3D structure
- PDB id
- 5JUT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CUCAAAUCAGGU*GCCUGUUUGAG
- Length
- 23 nucleotides
- Bulged bases
- 5JUT|1|B|U|14
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
5JUT|1|B|C|8
5JUT|1|B|U|9
5JUT|1|B|C|10
5JUT|1|B|A|11
5JUT|1|B|A|12
5JUT|1|B|A|13
5JUT|1|B|U|14
5JUT|1|B|C|15
5JUT|1|B|A|16
5JUT|1|B|G|17
5JUT|1|B|G|18
5JUT|1|B|U|19
*
5JUT|1|C|G|140
5JUT|1|C|C|141
5JUT|1|C|C|142
5JUT|1|C|U|143
5JUT|1|C|G|144
5JUT|1|C|U|145
5JUT|1|C|U|146
5JUT|1|C|U|147
5JUT|1|C|G|148
5JUT|1|C|A|149
5JUT|1|C|G|150
Current chains
- Chain B
- 25S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain CA
- uL23 (yeast L25)
- Chain L
- eL8 (yeast L8)
- Chain MA
- uL29 (yeast L35)
- Chain S
- eL15 (yeast L15)
Coloring options: