IL_5JUT_241

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AUCUAGACAG*CCGAAU

Length

16 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUT|1|B|A|1217
5JUT|1|B|U|1218
5JUT|1|B|C|1219
5JUT|1|B|U|1220
5JUT|1|B|A|1221
5JUT|1|B|G|1222
5JUT|1|B|A|1223
5JUT|1|B|C|1224
5JUT|1|B|A|1225
5JUT|1|B|G|1226
*
5JUT|1|B|C|1283
5JUT|1|B|C|1284
5JUT|1|B|G|1285
5JUT|1|B|A|1286
5JUT|1|B|A|1287
5JUT|1|B|U|1288

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain RA

eL40 (yeast L40)

Chain VA

uL10 (yeast P0)

Chain X

eL20 (yeast L20)