IL_5JUT_250

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GUAUUGGUUACCCAUC*GUAAGGCUUUC

Length

27 nucleotides

Bulged bases

5JUT|1|EC|C|6777, 5JUT|1|EC|C|6778, 5JUT|1|EC|U|6781, 5JUT|1|EC|U|6823

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUT|1|EC|G|6767
5JUT|1|EC|U|6768
5JUT|1|EC|A|6769
5JUT|1|EC|U|6770
5JUT|1|EC|U|6771
5JUT|1|EC|G|6772
5JUT|1|EC|G|6773
5JUT|1|EC|U|6774
5JUT|1|EC|U|6775
5JUT|1|EC|A|6776
5JUT|1|EC|C|6777
5JUT|1|EC|C|6778
5JUT|1|EC|C|6779
5JUT|1|EC|A|6780
5JUT|1|EC|U|6781
5JUT|1|EC|C|6782
*
5JUT|1|EC|G|6814
5JUT|1|EC|U|6815
5JUT|1|EC|A|6816
5JUT|1|EC|A|6817
5JUT|1|EC|G|6818
5JUT|1|EC|G|6819
5JUT|1|EC|C|6820
5JUT|1|EC|U|6821
5JUT|1|EC|U|6822
5JUT|1|EC|U|6823
5JUT|1|EC|C|6824

Current chains

Chain EC

IRES

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain E

uL1 (yeast L1)