IL_5JUT_251

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UACCAUAG*CAAAAA

Length

14 nucleotides

Bulged bases

5JUT|1|EC|U|6859, 5JUT|1|EC|A|6873

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5JUT|1|EC|U|6854
5JUT|1|EC|A|6855
5JUT|1|EC|C|6856
5JUT|1|EC|C|6857
5JUT|1|EC|A|6858
5JUT|1|EC|U|6859
5JUT|1|EC|A|6860
5JUT|1|EC|G|6861
*
5JUT|1|EC|C|6869
5JUT|1|EC|A|6870
5JUT|1|EC|A|6871
5JUT|1|EC|A|6872
5JUT|1|EC|A|6873
5JUT|1|EC|A|6874

Current chains

Chain EC

IRES

Nearby chains

Chain CB

uS7 (yeast S5)

Chain WB

eS25 (yeast S25)