IL_5JUT_256

3D structure

PDB id

5JUT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure IV (almost non-rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

GGU*GCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUT_256 not in the Motif Atlas

Geometric match to IL_7ECO_006

Geometric discrepancy: 0.2923

The information below is about IL_7ECO_006

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.1

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

174

Unit IDs

5JUT|1|B|G|17
5JUT|1|B|G|18
5JUT|1|B|U|19
*
5JUT|1|C|G|140
5JUT|1|C|C|141
5JUT|1|C|C|142

Current chains

Chain B

25S ribosomal RNA

Chain C

5.8S ribosomal RNA

Nearby chains

Chain CA

uL23 (yeast L25)

Chain MA

uL29 (yeast L35)

Chain S

eL15 (yeast L15)