IL_5JUU_003
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UCAAA*UGACAA
- Length
- 11 nucleotides
- Bulged bases
- 5JUU|1|A|A|468
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_003 not in the Motif Atlas
- Geometric match to IL_4V88_386
- Geometric discrepancy: 0.1688
- The information below is about IL_4V88_386
- Detailed Annotation
- Triple sheared related
- Broad Annotation
- Triple sheared
- Motif group
- IL_37842.2
- Basepair signature
- cWW-cWW-L-R-cWW-cWW-R-L
- Number of instances in this motif group
- 4
Unit IDs
5JUU|1|A|U|37
5JUU|1|A|C|38
5JUU|1|A|A|39
5JUU|1|A|A|40
5JUU|1|A|A|41
*
5JUU|1|A|U|466
5JUU|1|A|G|467
5JUU|1|A|A|468
5JUU|1|A|C|469
5JUU|1|A|A|470
5JUU|1|A|A|471
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain BB
- eS4 (yeast S4)
- Chain GB
- uS4 (yeast S9)
- Chain VB
- eS24 (yeast S24)
Coloring options: