IL_5JUU_007
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UAUAAG*UGAAA
- Length
- 11 nucleotides
- Bulged bases
- 5JUU|1|A|U|66, 5JUU|1|A|A|68
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_007 not in the Motif Atlas
- Homologous match to IL_4V88_390
- Geometric discrepancy: 0.2209
- The information below is about IL_4V88_390
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_87517.1
- Basepair signature
- cWW-L-R-L-R-tHS-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUU|1|A|U|64
5JUU|1|A|A|65
5JUU|1|A|U|66
5JUU|1|A|A|67
5JUU|1|A|A|68
5JUU|1|A|G|69
*
5JUU|1|A|U|82
5JUU|1|A|G|83
5JUU|1|A|A|84
5JUU|1|A|A|85
5JUU|1|A|A|86
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain DB
- eS6 (yeast S6)
- Chain VB
- eS24 (yeast S24)
Coloring options: