IL_5JUU_011
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GUAUAAC*GCUAAUAC
- Length
- 15 nucleotides
- Bulged bases
- 5JUU|1|A|U|170
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_011 not in the Motif Atlas
- Geometric match to IL_4V88_394
- Geometric discrepancy: 0.179
- The information below is about IL_4V88_394
- Detailed Annotation
- tWH-tWH-tHW-tHW
- Broad Annotation
- No text annotation
- Motif group
- IL_80604.3
- Basepair signature
- cWW-cWW-tWH-tWH-tHW-L-R-cWW
- Number of instances in this motif group
- 4
Unit IDs
5JUU|1|A|G|143
5JUU|1|A|U|144
5JUU|1|A|A|145
5JUU|1|A|U|146
5JUU|1|A|A|147
5JUU|1|A|A|148
5JUU|1|A|C|149
*
5JUU|1|A|G|165
5JUU|1|A|C|166
5JUU|1|A|U|167
5JUU|1|A|A|168
5JUU|1|A|A|169
5JUU|1|A|U|170
5JUU|1|A|A|171
5JUU|1|A|C|172
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain DB
- eS6 (yeast S6)
- Chain VB
- eS24 (yeast S24)
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