IL_5JUU_030

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AGGGCAAG*CU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_030 not in the Motif Atlas

Geometric match to IL_4V88_413

Geometric discrepancy: 0.1663

The information below is about IL_4V88_413

Detailed Annotation

SSU/LSU pseudoknot

Broad Annotation

No text annotation

Motif group

IL_41203.1

Basepair signature

cWW-L-cWW-L-L-R-cSH

Number of instances in this motif group

10

Unit IDs

5JUU|1|A|A|550
5JUU|1|A|G|551
5JUU|1|A|G|552
5JUU|1|A|G|553
5JUU|1|A|C|554
5JUU|1|A|A|555
5JUU|1|A|A|556
5JUU|1|A|G|557
*
5JUU|1|A|C|587
5JUU|1|A|U|588

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AB

uS3 (yeast S3)

Chain BC

eS30 (yeast S30)

Chain GB

uS4 (yeast S9)

Chain ZA

uS5 (yeast S2)