IL_5JUU_066

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

CG*CAG

Length

5 nucleotides

Bulged bases

5JUU|1|A|A|1427

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_066 not in the Motif Atlas

Homologous match to IL_4V88_452

Geometric discrepancy: 0.4639

The information below is about IL_4V88_452

Detailed Annotation

Single bulged A

Broad Annotation

No text annotation

Motif group

IL_31462.1

Basepair signature

cWW-L-cWW

Number of instances in this motif group

127

Unit IDs

5JUU|1|A|C|1280
5JUU|1|A|G|1281
*
5JUU|1|A|C|1426
5JUU|1|A|A|1427
5JUU|1|A|G|1428

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain AB

uS3 (yeast S3)

Chain AC

uS14 (yeast S29)

Chain EC

IRES

Chain RB

uS10 (yeast S20)

Chain ZA

uS5 (yeast S2)