IL_5JUU_080
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- CGCU*AAAAG
- Length
- 9 nucleotides
- Bulged bases
- 5JUU|1|A|A|1755, 5JUU|1|A|A|1756
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_080 not in the Motif Atlas
- Geometric match to IL_2OE8_002
- Geometric discrepancy: 0.3899
- The information below is about IL_2OE8_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_34618.2
- Basepair signature
- cWW-L-cWS-cWW
- Number of instances in this motif group
- 6
Unit IDs
5JUU|1|A|C|1644
5JUU|1|A|G|1645
5JUU|1|A|C|1646
5JUU|1|A|U|1647
*
5JUU|1|A|A|1753
5JUU|1|A|A|1754
5JUU|1|A|A|1755
5JUU|1|A|A|1756
5JUU|1|A|G|1757
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain B
- Large subunit ribosomal RNA; LSU rRNA
- Chain BC
- eS30 (yeast S30)
- Chain DC
- yeast eEF2
- Chain EC
- IRES
- Chain SA
- eL41 (yeast L41)
- Chain UB
- uS12 (yeast S23)
Coloring options: