IL_5JUU_085

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAG*CAAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_085 not in the Motif Atlas

Homologous match to IL_4V88_471

Geometric discrepancy: 0.1762

The information below is about IL_4V88_471

Detailed Annotation

Double sheared

Broad Annotation

Double sheared

Motif group

IL_09705.12

Basepair signature

cWW-tSH-tHS-cWW

Number of instances in this motif group

35

Unit IDs

5JUU|1|A|U|1669
5JUU|1|A|G|1670
5JUU|1|A|A|1671
5JUU|1|A|G|1672
*
5JUU|1|A|C|1729
5JUU|1|A|A|1730
5JUU|1|A|A|1731
5JUU|1|A|A|1732

Current chains

Chain A

18S ribosomal RNA

Nearby chains

Chain B

Large subunit ribosomal RNA; LSU rRNA

Chain DB

eS6 (yeast S6)

Chain FB

eS8 (yeast S8)