IL_5JUU_088
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- AGGAU*AGAAU
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_088 not in the Motif Atlas
- Geometric match to IL_4V88_474
- Geometric discrepancy: 0.2059
- The information below is about IL_4V88_474
- Detailed Annotation
- Triple sheared
- Broad Annotation
- No text annotation
- Motif group
- IL_95716.2
- Basepair signature
- cWW-cWW-tHS-tHS-tSH-cWW
- Number of instances in this motif group
- 18
Unit IDs
5JUU|1|A|A|1678
5JUU|1|A|G|1679
5JUU|1|A|G|1680
5JUU|1|A|A|1681
5JUU|1|A|U|1682
*
5JUU|1|A|A|1719
5JUU|1|A|G|1720
5JUU|1|A|A|1721
5JUU|1|A|A|1722
5JUU|1|A|U|1723
Current chains
- Chain A
- 18S ribosomal RNA
Nearby chains
- Chain BA
- eL24 (yeast L24)
- Chain DB
- eS6 (yeast S6)
- Chain FB
- eS8 (yeast S8)
Coloring options: