IL_5JUU_090
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GACC*GCGUC
- Length
- 9 nucleotides
- Bulged bases
- 5JUU|1|C|C|151
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_090 not in the Motif Atlas
- Geometric match to IL_1JID_002
- Geometric discrepancy: 0.2457
- The information below is about IL_1JID_002
- Detailed Annotation
- Tandem non-canonical cWW pairs
- Broad Annotation
- No text annotation
- Motif group
- IL_15225.2
- Basepair signature
- cWW-cWW-cWW-cWW
- Number of instances in this motif group
- 39
Unit IDs
5JUU|1|B|G|5
5JUU|1|B|A|6
5JUU|1|B|C|7
5JUU|1|B|C|8
*
5JUU|1|C|G|150
5JUU|1|C|C|151
5JUU|1|C|G|152
5JUU|1|C|U|153
5JUU|1|C|C|154
Current chains
- Chain B
- 25S ribosomal RNA
- Chain C
- 5.8S ribosomal RNA
Nearby chains
- Chain CA
- uL23 (yeast L25)
- Chain L
- eL8 (yeast L8)
- Chain S
- eL15 (yeast L15)
Coloring options: