IL_5JUU_091

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

AAUC*GUU

Length

7 nucleotides

Bulged bases

5JUU|1|B|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_091 not in the Motif Atlas

Geometric match to IL_1XJR_003

Geometric discrepancy: 0.2351

The information below is about IL_1XJR_003

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

214

Unit IDs

5JUU|1|B|A|12
5JUU|1|B|A|13
5JUU|1|B|U|14
5JUU|1|B|C|15
*
5JUU|1|C|G|144
5JUU|1|C|U|145
5JUU|1|C|U|146

Current chains

Chain B

25S ribosomal RNA

Chain C

5.8S ribosomal RNA

Nearby chains

Chain CA

uL23 (yeast L25)

Chain L

eL8 (yeast L8)

Chain S

eL15 (yeast L15)