IL_5JUU_117

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UGAAG*UGGAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_117 not in the Motif Atlas

Geometric match to IL_7RQB_021

Geometric discrepancy: 0.1947

The information below is about IL_7RQB_021

Detailed Annotation

Triple sheared

Broad Annotation

No text annotation

Motif group

IL_56467.8

Basepair signature

cWW-tSH-tSH-tHS-cWW

Number of instances in this motif group

29

Unit IDs

5JUU|1|B|U|834
5JUU|1|B|G|835
5JUU|1|B|A|836
5JUU|1|B|A|837
5JUU|1|B|G|838
*
5JUU|1|B|U|855
5JUU|1|B|G|856
5JUU|1|B|G|857
5JUU|1|B|A|858
5JUU|1|B|G|859

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain F

uL2 (yeast L2)

Chain UA

eL43 (yeast L43)

Chain W

eL19 (yeast L19)