IL_5JUU_127
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- GCGAAU*AAAC
- Length
- 10 nucleotides
- Bulged bases
- 5JUU|1|B|G|1001
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_127 not in the Motif Atlas
- Homologous match to IL_5TBW_040
- Geometric discrepancy: 0.2041
- The information below is about IL_5TBW_040
- Detailed Annotation
- C-loop
- Broad Annotation
- No text annotation
- Motif group
- IL_02509.3
- Basepair signature
- cWW-cWS-cWW-cWW-R-cSH-tWH-R
- Number of instances in this motif group
- 6
Unit IDs
5JUU|1|B|G|999
5JUU|1|B|C|1000
5JUU|1|B|G|1001
5JUU|1|B|A|1002
5JUU|1|B|A|1003
5JUU|1|B|U|1004
*
5JUU|1|B|A|1046
5JUU|1|B|A|1047
5JUU|1|B|A|1048
5JUU|1|B|C|1049
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain I
- uL18 (yeast L5)
- Chain N
- uL16 (yeast L10)
- Chain Y
- eL21 (yeast L21)
Coloring options: