IL_5JUU_134
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UUAAG*CUAUA
- Length
- 10 nucleotides
- Bulged bases
- 5JUU|1|B|U|1331
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_134 not in the Motif Atlas
- Homologous match to IL_8C3A_051
- Geometric discrepancy: 0.1802
- The information below is about IL_8C3A_051
- Detailed Annotation
- UAA/GAN
- Broad Annotation
- No text annotation
- Motif group
- IL_89002.4
- Basepair signature
- cWW-tWH-cWW-L-cWW-tHS
- Number of instances in this motif group
- 15
Unit IDs
5JUU|1|B|U|1167
5JUU|1|B|U|1168
5JUU|1|B|A|1169
5JUU|1|B|A|1170
5JUU|1|B|G|1171
*
5JUU|1|B|C|1328
5JUU|1|B|U|1329
5JUU|1|B|A|1330
5JUU|1|B|U|1331
5JUU|1|B|A|1332
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain D
- 5S ribosomal RNA; 5S rRNA
- Chain JA
- eL32 (yeast L32)
- Chain K
- uL30 (yeast L7)
- Chain KA
- eL33 (yeast L33)
- Chain V
- eL18 (yeast L18)
Coloring options: