IL_5JUU_135
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UGCCGGAA*UA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_135 not in the Motif Atlas
- Homologous match to IL_5TBW_049
- Geometric discrepancy: 0.172
- The information below is about IL_5TBW_049
- Detailed Annotation
- SSU/LSU pseudoknot
- Broad Annotation
- No text annotation
- Motif group
- IL_84902.1
- Basepair signature
- cWW-L-cWW-L-L-R-cHH
- Number of instances in this motif group
- 2
Unit IDs
5JUU|1|B|U|1173
5JUU|1|B|G|1174
5JUU|1|B|C|1175
5JUU|1|B|C|1176
5JUU|1|B|G|1177
5JUU|1|B|G|1178
5JUU|1|B|A|1179
5JUU|1|B|A|1180
*
5JUU|1|B|U|1325
5JUU|1|B|A|1326
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain K
- uL30 (yeast L7)
- Chain KA
- eL33 (yeast L33)
- Chain T
- uL13 (yeast L16)
- Chain X
- eL20 (yeast L20)
Coloring options: