IL_5JUU_152
3D structure
- PDB id
- 5JUU (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 4 Å
Loop
- Sequence
- UCUUC*GGAAUA
- Length
- 11 nucleotides
- Bulged bases
- 5JUU|1|B|U|1629, 5JUU|1|B|U|1815
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_5JUU_152 not in the Motif Atlas
- Geometric match to IL_5TBW_066
- Geometric discrepancy: 0.1702
- The information below is about IL_5TBW_066
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- IL_48431.1
- Basepair signature
- cWW-L-R-L-R-L-cWW
- Number of instances in this motif group
- 2
Unit IDs
5JUU|1|B|U|1627
5JUU|1|B|C|1628
5JUU|1|B|U|1629
5JUU|1|B|U|1630
5JUU|1|B|C|1631
*
5JUU|1|B|G|1811
5JUU|1|B|G|1812
5JUU|1|B|A|1813
5JUU|1|B|A|1814
5JUU|1|B|U|1815
5JUU|1|B|A|1816
Current chains
- Chain B
- 25S ribosomal RNA
Nearby chains
- Chain EA
- eL27 (yeast L27)
Coloring options: