IL_5JUU_158

3D structure

PDB id

5JUU (explore in PDB, NAKB, or RNA 3D Hub)

Description

Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)

Experimental method

ELECTRON MICROSCOPY

Resolution

4 Å

Loop

Sequence

UUAUCA*UCUUAUG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_5JUU_158 not in the Motif Atlas

Homologous match to IL_5TBW_072

Geometric discrepancy: 0.2247

The information below is about IL_5TBW_072

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_39753.2

Basepair signature

cWW-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

5JUU|1|B|U|1702
5JUU|1|B|U|1703
5JUU|1|B|A|1704
5JUU|1|B|U|1705
5JUU|1|B|C|1706
5JUU|1|B|A|1707
*
5JUU|1|B|U|1737
5JUU|1|B|C|1738
5JUU|1|B|U|1739
5JUU|1|B|U|1740
5JUU|1|B|A|1741
5JUU|1|B|U|1742
5JUU|1|B|G|1743

Current chains

Chain B

25S ribosomal RNA

Nearby chains

Chain LA

eL34 (yeast L34)