3D structure

PDB id
5JUU (explore in PDB, NAKB, or RNA 3D Hub)
Description
Saccharomyces cerevisiae 80S ribosome bound with elongation factor eEF2-GDP-sordarin and Taura Syndrome Virus IRES, Structure V (least rotated 40S subunit)
Experimental method
ELECTRON MICROSCOPY
Resolution
4 Å

Loop

Sequence
GGAA*UC
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_5JUU_162 not in the Motif Atlas
Geometric match to IL_7RQB_066
Geometric discrepancy: 0.0994
The information below is about IL_7RQB_066
Detailed Annotation
Major groove platform; stack outside cWW
Broad Annotation
Major groove platform
Motif group
IL_50694.2
Basepair signature
cWW-tSH-cWW-L
Number of instances in this motif group
27

Unit IDs

5JUU|1|B|G|1898
5JUU|1|B|G|1899
5JUU|1|B|A|1900
5JUU|1|B|A|1901
*
5JUU|1|B|U|2336
5JUU|1|B|C|2337

Current chains

Chain B
25S ribosomal RNA

Nearby chains

Chain AA
uL14 (yeast L23)
Chain G
uL3 (yeast L3)

Coloring options:


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